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The barley genome

Author: Nils Stein; Gary J Muehlbauer
Publisher: Cham, Switzerland : Springer, 2018.
Series: Compendium of plant genomes.
Edition/Format:   eBook : Document : English
Summary:
This book presents an overview of the state-of-the-art in barley genome analysis, covering all aspects of sequencing the genome and translating this important information into new knowledge in basic and applied crop plant biology and new tools for research and crop improvement. Unlimited access to a high-quality reference sequence is removing one of the major constraints in basic and applied research. This book  Read more...
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Genre/Form: Electronic books
Additional Physical Format: (OCoLC)1032591282
Material Type: Document, Internet resource
Document Type: Internet Resource, Computer File
All Authors / Contributors: Nils Stein; Gary J Muehlbauer
ISBN: 9783319925288 3319925288
OCLC Number: 1049150268
Description: 1 online resource.
Contents: Intro; Preface to the Series; Preface; Acknowledgements; Contents; 1 Economic and Academic Importance of Barley; Abstract; 1.1 Background; 1.2 World Barley Production; 1.3 Barley End Uses; 1.3.1 New Trends in Barley End Uses; 1.4 Academic Importance of Barley; 1.4.1 Examples of the Broad Impact of Barley Research; 1.4.1.1 Domestication; 1.4.1.2 Disease Resistance; 1.4.1.3 Mutation Research; 1.4.1.4 Grain Development and Germination; 1.5 Conclusions; References; 2 Taxonomy of the Genus Hordeum and Barley (Hordeum vulgare); Abstract; 2.1 Taxonomic Principles; 2.2 Hordeum and Triticeae 2.3 The Genus Hordeum and Subgeneric Units Within2.4 The Gene Pool Concept in Barley; 2.5 The Taxonomy of Barley in the Light of Its Evolution; 2.6 Conclusions; References; 3 Cytogenetics and Genetic Stocks for Physical Mapping and Sequencing; Abstract; 3.1 Identification of Barley Chromosomes; 3.2 Chromatin Composition of Barley; 3.3 Telomeres and Their Application for the Generation of Barley Mini-Chromosomes; 3.4 Analysis of the Barley Centromere and Its Role in the Process of Haploidization; 3.5 Barley Cytogenetic Stocks; 3.5.1 Trisomics 3.5.2 Wheat-Barley Addition, Substitution and Translocation Lines3.5.3 Translocations Lines; 3.6 Cytological Mapping of Barley Chromosomes; 3.6.1 Deletion Stocks and Their Use in Cytological Mapping; 3.7 Application of FISH to Correlate the Genetic with the Cytological Map of Barley; References; 4 Chromosomal Genomics of Barley; Abstract; 4.1 Development of Barley Chromosomal Genomics; 4.2 Applications of Flow Cytogenetics; 4.2.1 Physical Mapping; 4.2.2 Next-Generation Sequencing; 4.2.3 Preparation of High-Molecular-Weight DNA and Its Applications 4.2.4 Chromosomal Genomics in the Post-sequencing EraAcknowledgements; References; 5 Barley Genome Sequencing and Assembly-A First Version Reference Sequence; Abstract; 5.1 Introduction; 5.2 Whole-Genome Sequencing; 5.2.1 Sequencing Strategy and Assembly; 5.2.2 Genetic and Physical Ordering-Chromosome-Like Assemblies; 5.2.3 Barley RefSeq v1.0-Practical Considerations; 5.3 More Barley Genomes: The Barley Pan-Genome; Acknowledgements; References; 6 Gene Prediction in the Barley Genome; Abstract; 6.1 Introduction; 6.2 Evidence for Automated Gene Prediction; 6.3 Automated Gene Prediction Pipeline 6.4 ORF Prediction and Selection6.5 Confidence Classification of Gene Predictions; 6.6 Evaluation of Gene Calls; 6.6.1 Comparison to Gene Models in the WGS Assembly of Barley cv. Morex; 6.6.2 Benchmarking Universal Single-Copy Orthologs (BUSCO); 6.7 (Automated) Functional Annotation of Gene Models in Barley; 6.8 Characteristics and Number of Predicted Gene Models; 6.9 Data Availability and Download; 6.10 Annotation Shortcomings and Ways to Improve the Annotation; References; 7 The Expressed Portion of the Barley Genome; Abstract; 7.1 Introduction; 7.2 Dynamics of Gene Expression in Barley
Series Title: Compendium of plant genomes.
Responsibility: Nils Stein, Gary J. Muehlbauer, editors.

Abstract:

This book presents an overview of the state-of-the-art in barley genome analysis, covering all aspects of sequencing the genome and translating this important information into new knowledge in basic  Read more...

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