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Cap-analysis gene expression (CAGE) : the science of decoding gene transcription

Author: Piero Carninci
Publisher: Singapore : Pan Stanford, ©2010.
Edition/Format:   Print book : EnglishView all editions and formats
Summary:
"This book is a guide for users of new technologies, as it includes accurately proven protocols, allowing readers to prepare their samples for experiments. Additionally, it provides a guide for the bioinformatics tools that are available for the analysis of the obtained tags, including the design of the software, the sources and web information where they can be downloaded. Finally, the book provides examples of the  Read more...
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Additional Physical Format: Online version:
Cap-analysis gene expression (CAGE).
Singapore : Pan Stanford, ©2010
(OCoLC)761358359
Document Type: Book
All Authors / Contributors: Piero Carninci
ISBN: 9789814241342 9814241342
OCLC Number: 501938869
Description: xv, 266 pages : illustrations (some color) ; 24 cm
Contents: Cap analysis gene expression (CAGE) --
Tagging transcription starting sites with CAGE --
Construction of CAGE libraries --
Transcriptome and genome characterization using massively parallel paired end tag (PET) sequencing analysis --
New era of genome-wide expression analysis --
Computational tools to analyze CAGE --
introduction to PART II --
Extraction and quality control of CAGE tags --
Setting CAGE tags in a genomic context --
Using CAGE data for quantitative expression --
Databases for CAGE visualization and analysis --
Computational methods to identity transcription factor binding sites using CAGE information --
Transcription regulatory networks analysis using CAGE --
Gene expression ontologies and tag-based expression profiling --
Lessons learned from genomic CAGE --
Future challenges in CAGE analysis --
Comparative genomics and mammalian promoter evolution --
The impact of CAGE data on understanding macrophage transcriptional biology.
Responsibility: editor, Piero Carninci.

Abstract:

A guide for the bioinformatics tools for the analysis of the obtained tags, including the design of the software, the sources and web information where they can be downloaded. It provides examples of  Read more...

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"This is a comprehensive introduction to a powerful and important new technique that is transforming our understanding of gene regulation. This volume contains everything you need to know to become Read more...

 
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