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Gene mapping, discovery, and expression : methods and protocols

Author: Minou Bina
Publisher: Totowa, N.J. : Humana Press, ©2006.
Series: Methods in molecular biology (Clifton, N.J.), v. 338.
Edition/Format:   Print book : EnglishView all editions and formats
Database:WorldCat
Summary:
A collection of cutting-edge computational tools and experimental techniques to study how genes are regulated, and to reconstruct the regulatory networks through which various cell-types are produced. On the computational side, web-based technologies to localize genes, to access and retrieve data from microarray databases, to conduct comparative genomics, and to discover the potential genomic DNA that may control  Read more...
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Genre/Form: Laboratory Manuals
Material Type: Internet resource
Document Type: Book, Internet Resource
All Authors / Contributors: Minou Bina
ISBN: 1588295753 1597450979 9781597450973 9781588295750
OCLC Number: 61404526
Description: xiii, 334 pages : illustrations (some color) ; 24 cm.
Contents: Use of genome browsers to locate your favorite genes / Minou Bina --
Methods for identifying and mapping recent segmental and gene duplications in eukaryotic genomes / Razi Khaja [and others] --
Identification and mapping of paralogous genes on a known genomic DNA sequence / Minou Bina --
Quantitative DNA fiber mapping in genome research and construction of physical maps / Heinz-Ulrich G. Weier and Lisa W. Chu --
PRINS for mapping single copy genes / Avirachan T. Tharapel and Stephen S. Wachtel --
Vista family of computational tools for comparative analysis of DNA sequences and whole genomes / Inna Dubchak and Dmitriy V. Ryaboy --
Computational prediction of cis-regulatory modules from multispecies alignments using Galaxy, table browser, and GALA / Laura Elnitski, David King, and Ross C. Hardison --
Comparative promoter analysis in vertebrate genomes with the CORG workbench / Christoph Dieterich and Martin Vingron --
cis-regulatory region analysis using BEARR / Vinsensius Berlian Vega --
A database of 9-mers from promoter region of human protein-coding genes / Minou Bina, Phillip Wyss, and Syed Rehan Shah --
A program toolkit for the analysis of regulatory regions of genes / Phillip Wyss, Sheryl A. Lazarus, and Minou Bina. Analysis of allele-specific gene expression / Julian C. Knight --
Construction of micro-rna containing vectors for expression in mammalian cells / Yoko Fukuda, Hiroaki Kawasaki, and Kazunari Taira --
Mining microarray data at NCBI's gene expression omnibus (GEO) / Tanya Barrett and Ron Edgar --
The Stanford microarray database: a user's guide / Jeremy Gollub, Catherine A. Ball, and Gavin Sherlock --
Detecting nucleosome ladders on unique DNA sequences in mouse liver nuclei / Tomara J. Fleury, Alfred Cioffi, and Arnold Stein --
DNA methyltransferase probing of DNA-protein interactions / Scott A. Hoose and Michael P. Kladde --
Protein binding microarrays (PBMS) for the rapid, high-throughput characterization of the sequence specificities of DNA binding proteins / Michael F. Berger and Martha L. Bulyk --
Quantitative profiling of protein-DNA binding on microarrays / Jiannis Ragoussis, Simon Field, and Irina A. Udalova --
Analysis of protein-DNA binding by streptavidin-agarose pulldown / Kenneth K. Wu --
Isolation and mass spectrometry of specific DNA-binding proteins / Mariana Yaneva and Paul Tempst --
Isolation of transcription factor complexes by in vivo biotinylation tagging and direct binding to streptavidin beads / Patrick Rodriguez [and others].
Series Title: Methods in molecular biology (Clifton, N.J.), v. 338.
Responsibility: edited by Minou Bina.
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Abstract:

A collection of advanced computational tools and experimental techniques to study how genes are regulated, and to reconstruct the regulatory networks through which various cell-types are produced. It  Read more...

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