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Genomes, browsers, and databases : data-mining tools for integrated genomic databases

Author: Peter Schattner
Publisher: Cambridge [UK] ; New York : Cambridge University Press, 2008.
Edition/Format:   Print book : EnglishView all editions and formats
Summary:
Providing an overview of the key tools available for large-scale comparisons of gene sequences and annotations, this book focuses on the databases and tools from the University of California, Santa Cruz (UCSC), Ensembl, and the National Centre for Biotechnology Information (NCBI).
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Genre/Form: Databases
Material Type: Internet resource
Document Type: Book, Internet Resource
All Authors / Contributors: Peter Schattner
ISBN: 9780521884433 0521884438 9780521711326 0521711320
OCLC Number: 191751595
Description: xii, 328 pages : illustrations ; 26 cm
Contents: The molecular biology data explosion --
Introduction to genome browsing with the UCSC genome browser --
Browsing with Ensembl, MapViewer, and other genome browsers --
Interactive genome-database batch querying --
Interactive batch post-processing with galaxy --
Introduction to programmed querying --
Using the Ensembl API --
Programmed querying with Ensembl, continued --
Introduction to the UCSC API --
More advanced applications using the UCSC API --
Customized genome databases --
Genomes, browsers, databases : the future.
Responsibility: Peter Schattner.
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Abstract:

Focusing on the databases and tools from the University of California, Santa Cruz (UCSC), Ensembl, and the National Centre for Biotechnology Information (NCBI), this book provides an overview of the  Read more...

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'The book would suit a bioinformatician wishing to gain an introduction into genome database querying and interaction.' Microbiology Today '... provides a step-by-step account of how most Read more...

 
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