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Glycoinformatics

Author: Thomas Lütteke; Martin Frank
Publisher: New York : Humana Press, [2015]
Series: Methods in molecular biology (Clifton, N.J.), 1273.; Springer protocols (Series)
Edition/Format:   Print book : EnglishView all editions and formats
Database:WorldCat
Summary:

This book provides current glycoinformatics methods and protocols used to support the determination of carbohydrate structures in biological samples as well as carbohydrate structure databases, the  Read more...

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Genre/Form: Laboratory Manuals
Laboratory manuals
Material Type: Internet resource
Document Type: Book, Internet Resource
All Authors / Contributors: Thomas Lütteke; Martin Frank
ISBN: 9781493923427 1493923420
OCLC Number: 894301537
Description: xvi, 506 pages : illustrations (some color) ; 26 cm.
Contents: Annotation of glycomics MS and MS/MS spectra using the glycoworkbench software tool --
Glycobase and autogGU : resources for interpreting HPLC-glycan data --
NMR chemical shift prediction of glycans : application of the computer program CASPER in structural analysis --
Handling and conversion of carbohydrate sequence formats and monosaccharide notation --
Bacterial, plant, and fungal carbohydrate structure databases : daily usage --
Using NMR data on GLYCOSCIENCES.de --
Glycomic analysis using KEGG GLYCAN --
GlycomeDB --
Eukaryotic glycosylation : online methods for site prediction on protein sequences --
Analyzing glycan structure synthesis with the glycan pathway predictor (GPP) tool --
Functional network in posttranslational modifications : Glyco-Net in Glycoconjugate Data Bank --
JCGGDB : Japan Consortium for Glycobiology and Glycotechnology Database --
Glycan array data management at Consortium for Functional Glycomics --
Analyzing glycan-binding patterns with the profilepSTMM tool --
Exploring the specificities of glycan-binding proteins using glycan array data and the GlycoSearch software --
Statistical analysis of amino acids in the vicinity of carbohydrate residues performed by GlyVicinity --
Tools to assist determination and validation of carbohydrate 3D structure data --
Glyco3D : a portal for structural glycosciences --
Solution conformation of carbohydrates : a view by using NMR assisted by modeling --
Informing saccharide structural NMR studies with density functional theory calculations --
Energy maps for glycosidic linkage conformations --
Conformational analysis of oligosaccharides and polysaccharides using molecular dynamics simulations --
Molecular dynamics simulations of membrane- and protein-bound glycolipids using GLYCAM --
Lipopolysaccharide membrane building and simulation --
Molecular dynamics simulations of glycoproteins using CHARMM --
Calculating binding free energies for protein-carbohydrate complexes --
Scoring functions for AutoDock --
Structures of glycans bound to receptors from saturation transfer difference (STD) NMR spectroscopy : quantitative analysis by using CORCEMA-ST --
QM/MM methods for studying enzymatic reactions of glycosyltransferases.
Series Title: Methods in molecular biology (Clifton, N.J.), 1273.; Springer protocols (Series)
Responsibility: edited by Thomas Lütteke, Justus-Liebig-University, Giessen, Germany, Martin Frank, Biognos AB, Göteborg, Sweden.

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