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Handbook of molecular microbial ecology II : metagenomics in different habitats

Author: F J de Bruijn
Publisher: Hoboken, N.J. : Wiley-Blackwell, ©2011.
Edition/Format:   Print book : EnglishView all editions and formats
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Metagenomics has revolutionized microbiology and many associated health and environmental fields. This is the first comprehensive treatise covering the various -omics in a large variety of habitats,  Read more...

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Material Type: Internet resource
Document Type: Book, Internet Resource
All Authors / Contributors: F J de Bruijn
ISBN: 9780470647196 0470647191 9780470924181 0470924187 9780470644799 0470644796 9781118010518 1118010515 9781118010549 111801054X 9781118010440 1118010442 9781118010525 1118010523 9781118010495 1118010493 9781118010532 1118010531
OCLC Number: 696096655
Description: xx, 609 pages : illustrations ; 29 cm
Contents: Introduction / Frans J. de Bruijn --
Viral metagenomics / Shannon J. Williamson --
Methods in viral metagenomics / Rebecca Vega Thurber --
Metagenomic contrasts of viruses in soil and aquatic environments / K. Eric Wommack [and others] --
Biodiversity and biogeography of phages in modern stromatolites and thrombolites / Christelle Desnues [and others] --
Assembly of viral metagenomes from Yellowstone hot springs reveals phylogenetic relationships and host co-evolution / Thomas W. Schoenfeld and David Mead --
Next-generation sequencing and metagenomic analysis: a universal diagnostic tool in plant pathology / Ian P. Adams [and others] --
Direct metagenomic detection of viral pathogens in human specimens using an unbiased high-throughput sequencing approach / Takaaki Nakaya [and others] --
Soil-based metagenomics / Rolf Daniel --
Methods in metagenomic DNA, RNA, and protein isolation from soil / T. Rajesh [and others] --
Soil microbial DNA purification strategies for multiple metagenomic applications / Larissa C. Parsley [and others] --
Application of PCR-DGGE and metagenome walking to retrieve full-length functional genes from soil / Sho Morimoto and Takeshi Fujii --
Actinobacterial diversity associated with Antarctic dry valley mineral soils / Bronwyn M. Kirby [and others] --
Targeting major soil-borne bacterial lineages using large-insert metagenomic approaches / Anna M. Kielak and George A. Kowalchuk --
Novelty and uniqueness patterns of rare members of the soil biosphere / Mostafa S. Elshahed and Noha H. Youssef --
Extensive phylogenetic analysis of a soil bacterial community illustrates extreme taxon evenness and the effects of amplicon length, degree of coverage, and DNA fractionation on classification and ecological parameters / Sergio E. Morales [and others] --
The antibiotic resistome: origins, diversity, and future prospects / Erin L. Westman and Gerard D. Wright --
Functional intestinal metagenomics / Bartholomeus van den Bogert [and others] --
Assessment and improvement of methods for microbial DNA preparation from fecal samples / Mariko Ueno [and others] --
The role of dysbiosis in inflammatory bowel diseases / Johan Dicksved and Ben Willing --
Culture-independent analysis of the human gut microbiota and their activities / Jonathan Swann [and others] --
Complete genome of an uncultured endosymbiont coupling nitrogen fixation to cellulolysis within protist cells in termite gut / Yuichi Hongoh --
Cloning and identification of genes encoding acidic cellulases from the metagenomes of buffalo rumen / Cheng-Jie Duan, Jun-Liang Liu, and Jia-Xun Feng --
Microbial diversity in the deep sea and the underexplored "rare biosphere" / David B. Mark Welch and Susan M. Huse --
Bacterial community structure and dynamics in a seasonally anoxic fjord: Saanich Inlet, British Columbia / David A. Walsh and Steven J. Hallam --
Adaptation to nutrient availability in marine microorganisms by gene gain and loss / Adam C. Martiny, Ying Huang, and Weizhong Li --
Detection of large numbers of novel sequences in the metatranscriptomes of complex marine microbial communities / Jack A. Gilbert [and others] --
Metagenomic approach studying the taxonomic and functional diversity of the bacterial community in a lacustrine ecosystem / Didier Debroas [and others] --
Metagenomics of the marine subsurface: the first glimpse from the Peru margin, ODP site 1229 / Jennifer F. Biddle --
A targeted metagenomic approach to determine the "population genome" of marine Synechococcus / Sophie Mazard [and others] --
Diversity and role of bacterial integron/gene cassette metagenome in extreme marine environments / Hosam Elsaied and Akihiko Maruyama --
The Olavius algarvensis metagenome revisited: lessons learned from the analysis of the low-diversity microbial consortium of a gutless marine worm / Manuel Kleiner [and others] --
Microbiome diversity in human saliva / Ivan Nasidze and Mark Stoneking --
Approaches to understanding population level functional diversity in a microbial community / Devaki Bhaya --
A functional metagenomic approach for discovering nickel resistance genes from the rhizosphere of an acid mine drainage environment / Salvador Mirete, Carolina G. de Figueras, and Jose E. González-Pastor --
The microbiome of leaf-cutter ant fungus gardens / Garret Suen [and others] --
Diversity of Archaea in terrestrial hot springs and role in ammonia oxidation / Chuanlun L. Zhang, Brian P. Hedlund, and Jun Meng --
Colonization of nascent, deep-sea hydrothermal vents by a novel archaeal and nanoarchael assemblage / Thomas D. Niederberger, Elizabeth A. McCliment, and S. Craig Cary --
Analysis of the metagenome from a biogas-producing microbial community by means of bioinformatics methods / Sebastian Jaenicke [and others] --
Amplicon pyrosequencing analysis of endosymbiont population structure / Frank J. Stewart and Colleen M. Cavanaugh --
Investigating bacterial diversity along alkaline hot-spring thermal gradients by barcoded pyrosequencing / Scott R. Miller and Michael Weltzer --
Genetic characterization of microbial communities living at the surface of building stones / Maïté Berdoulay and Jean-Claude Salvado --
Novel aromatic degradation pathway genes and their organization as revealed by metagenomic analysis / Kentaro Miyazaki --
Functional screening a wide host-range metagenomic library from a wastewater treatment plant yields a novel alcohol/aldehyde dehydrogenase / Margaret Wexler [and others] --
Aromatic hydrocarbon degradation genes from chronically polluted subantarctic marine sediments / Hebe M. Dionisi [and others] --
Isolation and characterization of alkane hydroxylases from a metagenomic library of Pacific deep-sea sediment / Fengping Wang, Meixiang Xu, and Xiang Xiao --
Emerging fields in functional metagenomics and its industrial relevance: overcoming limitations and redirecting the search for novel biocatalysts / Mirjam Perner [and others] --
Carboxylesterases and lipases from metagenomes / Jennifer Chow [and others] --
Expanding small-molecule functional metagenomics through parallel screening of broad host-range cosmid environmental DNA libraries in diverse Proteobacteria / Jeffrey W. Craig and Sean F. Brady --
Biomedicinals from the microbial metagenomes of marine invertebrates / Walter C. Dunlap, Paul F. Long, and Marcel Jaspars --
Molecular characterization of TEM-type beta-lactamases identified in cold-seep sediments of Edison Seamount (south of Lihir Island, Papua New Guinea) / Sang Hee Lee and Jung-Hyun Lee --
Identification of novel bioactive compounds from the metagenome of the marine sponge Haliclona simulans / David P.H. Lejon, Jonathan Kennedy, and Alan D.W. Dobson --
Functional viral metagenomics and the development of new enzymes for DNA and RNA amplification and sequencing / Thomas W. Schoenfeld [and others] --
Metagenomics: the paths forward / C. Titus Brown and James M. Tiedje --
Darwin in the twenty-first century: natural selection, molecular biology, and species concepts / Francisco J. Ayala.
Responsibility: edited by Frans J. de Bruijn.
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Handbook of Molecular Microbial Ecology II is an invaluable reference for researchers in metagenomics, microbial ecology, microbiology; those working on the Human Microbiome Project; microbial Read more...

 
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