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Proteome bioinformatics

Author: Simon J Hubbard; Andrew R Jones
Publisher: New York, NY : Humana, ©2010.
Series: Springer protocols (Series); Methods in molecular biology (Clifton, N.J.), v. 604.
Edition/Format:   Print book : EnglishView all editions and formats
Database:WorldCat
Summary:

This book probes the fluid field of proteomics, offering review and methodology chapters that address the fundamentals of analysis methods, algorithms, data standards and databases. Topics covered  Read more...

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Genre/Form: Aufsatzsammlung
Additional Physical Format: Print version:
Proteome bioinformatics.
New York, N.Y. : Humana Press, ©2010
(DLC) 2009941056
(OCoLC)496297468
Material Type: Internet resource
Document Type: Book, Internet Resource
All Authors / Contributors: Simon J Hubbard; Andrew R Jones
ISBN: 9781607614432 160761443X 9781607614449 1607614448 9781617796807 1617796808
OCLC Number: 428029505
Description: xi, 403 pages : illustrations ; 27 cm.
Contents: 1. An introduction to proteome bioinformatics / Andrew R. Jones and Simon J. Hubbard --
2. Bioinformatics methods for protein identifiction using peptide mass fingerprinting / Zhao Song, Luonan Chen, and Dong Xu --
3. Computational approaches to peptide identification via tandem MS / Simon J. Hubbard --
4. Scoring and validation of tandem MS peptide identification methods / Markus Brosch and Jyoti Choudhary --
5. Target-decoy search strategy for mass spectrometry-based proteomics / Joshua E. Elias and Steven P. Gygi --
6. Understanding and exploiting peptide fragment ion intensities using experimental and informatic approaches / Ashley C. Gucinski [and others] --
7. Spectral library searching for peptide identification via tandem MS / Henry Lam and Ruedi Aebersold --
8. De Novo sequencing methods in proteomics / Christopher Hughes, Bin Ma, and Gilles A. Lajoie --
9. Cross species proteomics / J.C. Wright, R.J. Beynon, and S.J. Hubbard --
10. Gene model detection using mass spectrometry / Bindu Nanduri [and others] --
11. Signal processing in proteomics / Rene Hussong and Andreas Hildebrandt --
12. A High performance reconfigurable computing solution for peptide mass fingerprinting / Daniel Coca, Istvan Bogdan, and Robert J. Beynon --
13. Mining proteomic MS/MS data for MRM transitions / Jennifer A. Chem (Mead), Luca Bianco, and Conrad Bessant --
14. OpenMS and TOPP: Open source software for LC-MS data analysis / Knut Reinert and Oliver Kohlbacher --
15. Trans-Proteomic pipeline: a pipeline for proteomic analysis / Patrick G.A. Pedrioli --
16. Informatics and statistics for analyzing 2-D gel electrophoresis images / Andrew W. Dowsey ... et al. --
17. Automated generic analysis tools for protein quantitation using stable isotope labeling / Wen-Lian Hsu and Ting-Yi Sung --
18. An Overview of label-free quantitation methods in proteomics by mass spectrometry / Jason W.H. Wong and Gerard Cagney --
19. The PeptideAtlas Project / Eric W. Deutsch --
20. Using the PRIDE proteomics identifications database for knowledge discovery and data analysis / Philip Jones and Lennart Martens --
21. Molecular interactions and data standardisation / Sandra Orchard and Samuel Kerrien --
22. Mass spectrometer ouput file format mxML / Eric W. Deutsch --
23. Managing experimental data using FuGE / Andrew R. Jones and Allyson L. Lister --
24. Proteomics data collection (ProDaC): Publishing and collection proteomics data sets in public repositories using standard formats / Christian Stephan [and others] --
25. Computational resources for the prediction and analysis of native disorder in proteins / Melissa M. Pentony, Jonathan Ward, and David T. Jones.
Series Title: Springer protocols (Series); Methods in molecular biology (Clifton, N.J.), v. 604.
Responsibility: edited by Simon J. Hubbard, Andrew R. Jones.
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