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Structural bioinformatics

Author: Jenny Gu; Philip E Bourne
Publisher: Hoboken, N.J. : Wiley-Blackwell, ©2009.
Series: Methods of biochemical analysis, v. 44.
Edition/Format:   Print book : English : 2nd edView all editions and formats
Summary:
The second edition of this successful text expands on the depth and scope of the topic by bringing together many of the world's experts to provide a view of the current state of the field suitable for advanced undergraduate students, graduate students and beyond. The book begins with a description of the principles of protein, DNA and RNA structure, the methods used to collect the data, and how the data are  Read more...
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Genre/Form: Aufsatzsammlung
Material Type: Internet resource
Document Type: Book, Internet Resource
All Authors / Contributors: Jenny Gu; Philip E Bourne
ISBN: 9780470181058 0470181052
OCLC Number: 253189841
Notes: 1st edition of Structural bioinformatics is v. 44 of the Methods of biochemical analysis series.
Description: xxvi, 1035 pages, [32] pages of plates : illustrations (some color) ; 26 cm.
Contents: Data Collection, Analysis, and Visualization --
Defining Bioinformatics and Structural Bioinformatics / Russ B. Altman, Jonathan M. Dugan --
Fundamentals of Protein Structure / Eric D. Scheef, J. Lynn Fink --
Fundamentals of DNA and RNA Structure / Stephen Neidle, Bohdan Schneider, Helen M. Berman --
Computational Aspects of High-Throughput Crystallographic Macromolecular Structure Determination / Paul D. Adams, Ralf W. Grosse-Kunstleve, Axel T. Brunger --
Macromolecular Structure Determination by NMR Spectroscopy / John L. Markley, Arash Bahrami, Hamid R. Eghbalnia, Francis C. Peterson, Robert C. Tyler, Eldon L. Ulrich, William M. Westler, Brian F. Volkman --
Electron Microscopy in the Context of Structural Systems Biology / Niels Volkmann, Dorit Hanein --
Study of Protein Three-Dimensional Structure and Dynamics Using Peptide Amide Hydrogen/Deuterium Exchange Mass Spectrometry (DXMS) and Chemical Cross-Linking With Mass Spectrometry to Constrain Molecular Modeling / Sheng Li, Dmitri Mouradov, Gordon King, Tong Liu, Ian Ross, Bostjan Kobe, Virgil L. Woods, Jr., Thomas Huber --
Search and Sampling in Structural Bioinformatics / Han Samish --
Molecular Visualization / Steven Bottomley, Erik Helmerhorst. Data representation and databases --
The PDB Format, mmCIF Formats, and Other Data Formats / John D. Westbrook, Paula M.D. Fitzgerald --
The Worldwide Protein Data Bank / Helen M. Berman, Kim Henrick, Haruki Nakamura, John L. Markley --
The Nucleic Acid Database / Bohdan Schneider, Joanna de la Cruz, Zukang Feng, Li Chen, Shuchismita Dutta, Irina Persikova, John D. Westbrook, Huanwang Yang, Jasmine Young, Christine Zardecki, Helen M. Berman --
Other Structure-Based Databases / J. Lynn Fink, Helge Weissig, and Philip E. Bourne. Data integrity and comparative features --
Structural Quality Assurance / Roman A. Laskowski --
The Impact of Local Accuracy in Protein and RNA Structures: Validation as an Active Tool / Jane S. Richardson, David C. Richardson --
Structure Comparison and Alignment / Marc A. Marti-Renom, Emidio Capriotti, Ilya N. Shindyalov, Philip E. Bourne --
Protein Structure Evolution and the SCOP Database / Raghu P.R. Metpally, Boojala V.B. Reddy --
The CATH Domain Structure Database / Frances M.G. Pearl, Alison Cuff, Christine A. Orengo. Structural and functional assignment --
Secondary Structure Assignment / Claus A. Andersen, Burkhard Rost --
Identifying Structural Domains in Proteins / Stella Veretnik, Jenny Gu, Shoshana Wodak --
Inferring Protein Function from Structure / James D. Watson, Gail J. Bartlett, Janet M. Thornton --
Structural Annotation of Genomes / Adam J. Reid, Corin Yeats, Jonathan Lees, Christine A. Orengo --
Evolution Studied Using Protein Structure / Song Yang, Ruben Valas, Philip E. Bourne. Macromolecular interactions --
Electrostatic Interactions / Nathan A. Baker, J. Andrew McCammon --
Prediction of Protein-Nucleic Acid Interactions / Timothy Robertson, Gabriele Varani --
Prediction of Protein-Protein Interactions from Evolutionary Information / Alfonso Valencia, Florencio Pazos --
Docking Methods, Ligand Design, and Validating Data Sets in the Structural Genomics Era / Natasja Brooijmans. Structure prediction --
CASP and Other Community-Wide Assessments to Advance the Field of Structure Prediction / Jenny Gu, Philip E. Bourne --
Prediction of Protein Structure in 1D: Secondary Structure, Membrane Regions, and Solvent Accessibility / Burkhard Rost --
Homology Modeling / Hanka Venselaar, Elmar Krieger, Gert Vriend --
Fold Recognition Methods / Adam Godzik --
De Novo Protein Structure Prediction: Methods and Application / Kevin Drew, Dylan Chivian, Richard Bonneau --
RNA Structural Bioinformatics / Magdalena A. Jonikas, Alain Laederach, Russ B. Altman. Therapeutic discovery --
Structural Bioinformatics in Drug Discovery / William R. Pitt, Alicia Perez Higueruelo, Colin R. Groom --
B-Cell Epitope Prediction / Julia V. Ponomarenko, Marc H.V. van Regenmortel. Future Challenges --
Methods to Classify and Predict the Structure of Membrane Proteins / Marialuisa Pellegrini-Calace, Janet M. Thornton --
Protein Motion: Simulation / Ilan Samish, Jenny Gu, Michael L. Klein --
The Significance and Impacts of Protein Disorder and Conformational Variants / Jenny Gu, Vincent J. Hilser --
Protein Designability and Engineering / Nikolay V. Dokholyan --
Structural Genomics of Protein Superfamilies / Stephen K. Burley, Steven C. Almo, Jeffrey B. Bonanno --
Mark R. Chance, Spencer Emtage, Andras Fiser, Andrej Sali, J. Michael Sauder, Subramanyam Swaminathan.
Series Title: Methods of biochemical analysis, v. 44.
Responsibility: edited by Jenny Gu, Philip E. Bourne.

Abstract:

Structural Bioinformatics was the first major effort to show the application of the principles and basic knowledge of the larger field of bioinformatics to questions focusing on macromolecular  Read more...

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"Offering a detailed coverage for practitioners but remaining accessible to the novice, Structural Bioinformatics, Second Edition is a valuable and excellent textbook for readers in the Read more...

 
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