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Understanding host-microbiome interactions -- an omics approach : omics of host-microbiome association

Author: Ravindra Pal Singh; Ramesh Kothari; Prakash G Koringa; Satya Prakash Singh
Publisher: Singapore : Springer, [2017] ©2017
Edition/Format:   eBook : Document : EnglishView all editions and formats
Summary:
This book offers up-to-date information on different microbiomes, their community composition and interactive functions with the host, bringing together information from diverse research reports to provide an overview of the rapid developments in meta-omics technologies. It is a valuable resource for scientists, researchers, postgraduate and graduate students interested in understanding the impact and importance of  Read more...
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Genre/Form: Electronic books
Additional Physical Format: Print version:
(OCoLC)985081694
Material Type: Document, Internet resource
Document Type: Internet Resource, Computer File
All Authors / Contributors: Ravindra Pal Singh; Ramesh Kothari; Prakash G Koringa; Satya Prakash Singh
ISBN: 9789811050503 9811050503
OCLC Number: 1021248549
Description: 1 online resource
Contents: Preface; Contents; Contributors; About the Editors; Part I: Next Generation Sequence Technology; 1: The Omics Era and Host Microbiomes; 1.1 Introduction; 1.2 The Human Microbiome; 1.3 The Plant Microbiomes; References; 2: Uncultivated Lineages and Host-Microbe Interaction in Saline Environment; 2.1 Introduction; 2.2 Culture-Independent (Meta-analysis) Approaches; 2.2.1 Metagenomics; 2.2.1.1 Holobionts and Hologenomes ; 2.2.2 Metatranscriptomics; 2.2.3 Metaproteomics; 2.3 Habitats and Host-Microbe Interaction. 2.4 Analysis of the Host-Microbe Interaction by Metagenomics, Metatranscriptomics, and Metaproteomics2.5 Detection of Phylogenetic Marker; 2.5.1 Reference Species for Host-Microbe Interaction; 2.6 Detection of Host-Microbe Interaction by Various Techniques Is Displayed in Table 2.1; References; 3: Exploring Metagenomes Using Next-Generation Sequencing ; 3.1 Metagenomics: A Step Ahead in Microbial Ecology; 3.2 Approaches to Study Metagenomes; 3.2.1 Shotgun Metagenomics; 3.2.2 Targeted Metagenomics; 3.2.2.1 Bacterial Community Profiling Through 16S Amplicon Sequencing. 3.2.2.2 Fungal Community Profiling Through ITS, LSU and SSU Amplicon Sequencing3.3 Metatranscriptomics (RNA Transcript Sequencing); 3.4 Next-Generation Sequencing Technologies for Metagenomics; 3.4.1 Roche 454 Sequencing (GS20, GS-FLX, GS-FLX Titanium, GS-FLX Titanium Plus); 3.4.2 Illumina Sequencing (GA I, GA II, HiSeq, MiSeq, NextSeq 500, HiSeq 2500, HiSeq X Ten); 3.4.3 Applied Biosystem's SOLiD; 3.4.4 Ion Torrent Sequencing (PGM, Proton, S5); 3.4.5 Pacific Biosciences (PacBio RS II); 3.4.6 Oxford Nanopore Sequencing; 3.4.7 Irys Technology of BioNano Genomics. 3.5 Basic Steps in Metagenomic Data Analysis3.6 Future of Metagenomics; References; 4: Metagenomics: An Era of Throughput Gene Mining; 4.1 Introduction; 4.2 Gene Mining from Soil Metagenome; 4.3 Gene Mining from Marine Metagenome; 4.4 Metagenomic Approaches for Gene Mining; 4.4.1 Sequence-Based Approach; 4.4.2 Functional-Based Approach; References; 5: Prospects and Progress in Extreme Biosphere Microbiome; 5.1 Extremophiles and Extreme Environments; 5.2 Metagenomics and Microbial Diversity; 5.3 Environmental Metagenomics; 5.4 Challenges in Environmental DNA Extraction. 5.5 Sequencing Platforms5.5.1 PacBio Sequencing; 5.5.2 Oxford Nanopore Sequencing; 5.6 Future Prospects; References; Part II: Human Microbiome; 6: 16S rRNA Metagenomics of Asian Gut Microbiota; 6.1 Introduction of Asian Microbiome Project (AMP); 6.2 Phase I Pilot Study (Nakayama et al. 2015); 6.2.1 Bacterial Composition and Enterotype Clustering of 303 Children Samples; 6.2.2 Predicted Function of Each Enterotype Community; 6.2.3 Local Variation Associated with Country; 6.3 Comparison of 16S rRNA Metagenomic Data from MiSeq Platform to that from 454 Platform.
Responsibility: Ravindra Pal Singh, Ramesh Kothari, Prakash G. Koringa, Satya Prakash Singh, editors.

Abstract:

This book offers up-to-date information on different microbiomes, their community composition and interactive functions with the host, bringing together information from diverse research reports to provide an overview of the rapid developments in meta-omics technologies. It is a valuable resource for scientists, researchers, postgraduate and graduate students interested in understanding the impact and importance of next generation sequencing technologies on different hosts and their microbiomes.

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