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Comparative genomics : methods and protocols

Author: Joao Carlos Setubal; Jens Stoye; Peter F Stadler
Publisher: New York, NY : Humana Press : Springer, ©2018.
Series: Methods in molecular biology (Clifton, N.J.), v. 1704.
Edition/Format:   eBook : Document : EnglishView all editions and formats
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Genre/Form: Laboratory Manual
Electronic books
Laboratory manuals
Additional Physical Format: Print version:
Comparative genomics.
New York, NY : Humana Press : Springer, ©2018
Material Type: Document, Internet resource
Document Type: Internet Resource, Computer File
All Authors / Contributors: Joao Carlos Setubal; Jens Stoye; Peter F Stadler
ISBN: 9781493974634 1493974637 9781493974610 1493974610
OCLC Number: 1017476654
Description: 1 online resource (xii, 481 pages) : illustrations (some color)
Contents: Gene phylogenies and orthologous groups / Joao C. Setubal and Peter F. Stadler --
Pan-genome storage and analysis techniques / Tina Zekic, Guillaume Holley, and Jens Stoye --
Comparative genomics for prokaryotes / Joao C. Setubal, Nalvo F. Almeida, and Alice R. Wattam --
Assembly, annotation, and comparative genomics in PATRIC, the all bacterial bioinformatics resource center / Alice R. Wattam, Thomas Brettin, James J. Davis, Svetlana Gerdes, Ronald Kenyon, Dustin Machi, Chunhong Mao, Robert Olson, Ross Overbeek, Gordon D. Pusch, Maulik P. Shukla, Rick Stevens, Veronika Vonstein, Andrew Warren, Fangfang Xia, and Hyunseung Yoo --
Phylogenomics / Jose S.L. Patane, Joaquim Martins-JR, and Joao C. Setubal --
Comparative genome annotation / Stefanie Konig, Lars Romoth, and Mario Stanke --
Practical guide for comparative genomics of mobile genetic elements in prokaryotic genomes / Danillo Oliveira Alvarenga, Leandro M. Moreira, Mick Chandler, and Alessandro M. Varani --
Comparative metagenomics / Andrew Maltez Thomas, Felipe Prata Lima, Livia Maria Silva Moura, Aline Maria da, Silva, Emmanuel Dias Neto, and Joao C. Setubal --
Genome rearrangement analysis : cut and join genome rearrangements and gene cluster preserving approaches / Tom Hartmann, Martin Middendorf, and Matthias Bernt --
Whole genome duplication in plants : implications for evolutionary analysis / David Sankoff and Chunfang Zheng --
Sequence-based synteny analysis of multiple large genomes / Daniel Doerr and Bernard M.E. Moret --
Family-free genome comparison / Daniel Doerr, Pedro Feijao, and Jens Stoye --
Comparative methods for reconstructing ancient genome organization / Yoann Anselmetti, Nina Luhmann, Severine Berard, Eric Tannier, and Cedric Chauve --
Comparative RNA genomics / Rolf Backofen, Jan Gorodkin, Ivo L. Hofacker, and Peter F. Stadler --
Bioinformatic approaches for comparative analysis of viruses / Deyvid Amgarten and Chris Upton --
Comparative genomics of gene loss and gain in Caenorhabditis and other nematodes / Christian Rodelsperger --
Comparative genomics in Drosophila / Martin Oti, Attilio Pane, and Michael Sammeth --
Comparative genomics in Homo sapiens / Martin Oti and Michael Sammeth.
Series Title: Methods in molecular biology (Clifton, N.J.), v. 1704.
Responsibility: edited by João C. Setubal, Jens Stoye, Peter F. Stadler.

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