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Eukaryotic genomic databases : methods and protocols

Author: Martin Kollmar
Publisher: New York, NY : Humana Press : Springer, [2018] ©2018
Series: Methods in molecular biology (Clifton, N.J.), v. 1757.
Edition/Format:   eBook : Document : EnglishView all editions and formats
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Genre/Form: Electronic books
Laboratory manuals
Laboratory Manual
Additional Physical Format: Print version:
Material Type: Document, Internet resource
Document Type: Internet Resource, Computer File
All Authors / Contributors: Martin Kollmar
ISBN: 9781493977376 1493977377
OCLC Number: 1035766404
Description: 1 online resource (xvi, 581 pages) : illustrations (chiefly color).
Contents: Identifying sequenced eukaryotic genomes and transcriptomes with diArk / Martin Kollmar and Dominic Simm --
Introduction to the Saccharomyces genome database (SGD) / Olivia W. Lang, Robert S. Nash, Sage T. Hellerstedt, Stacia R. Engel, and The SGD Project --
Using the Candida genome database / Marek S. Skrzypek, Jonathan Binkley, and Gavin Sherlock --
PomBase : the scientific resource for fission yeast / Antonia Lock, Kim Rutherford, Midori A. Harris, and Valerie Wood --
EuPathDB : the eukaryotic pathogen genomics database resource / Susanne Warrenfeltz, Evelina Y. Basenko, Kathryn Crouch, Omar S. Harb, Jessica C. Kissinger, David S. Roos, Achchuthan Shanmugasundram, and Fatima Silva-Franco --
Ensembl genome browser : strategies for accessing eukaryotic genome data / Victoria Newman, Benjamin Moore, Helen Sparrow, and Emily Perry --
Mouse genome informatics (MGI) is the international resource for information on the laboratory mouse / MeiYee Law and David R. Shaw --
Primer for the rat genome database (RGD) / Stanley J. F. Laulederkind, G. Thomas Hayman, Shur-Jen Wang, Jennifer R. Smith, Victoria Petri, Matthew J. Hoffman, Jeff De Pons, Marek A. Tutaj, Omid Ghiasvand, Monika Tutaj, Jyothi Thota, Melinda R. Dwinell, and Mary Shimoyama --
Bovine genome Ddatabase : tools for mining the Bos taurus genome / Darren E. Hagen, Deepak R. Unni, Aditi Tayal, Gregory W. Burns, and Christine G. Elsik --
Navigating Xenbase : an integrated Xenopus genomics and gene expression database / Christina James-Zorn, Virgilio Ponferrada, Malcolm E. Fisher, Kevin Burns, Joshua Fortriede, Erik Segerdell, Kamran Karimi, Vaneet Lotay, Dong Zhuo Wang, Stanley Chu, Troy Pells, Ying Wang, Peter D. Vize, and Aaron Zorn --
Using ZFIN : data types, organization, and retrieval / Ceri E. Van Slyke, Yvonne M. Bradford, Douglas G. Howe, David S. Fashena, Sridhar Ramachandran, Leyla Ruzicka, and ZFIN Staff --
EchinoBase : tools for Echinoderm genome analyses / Gregory A. Cary, R. Andrew Cameron, and Veronica F. Hinman --
Multi-omics database for parasitic nematodes and trematodes / John Martin, Rahul Tyagi, Bruce A. Rosa, and Makedonka Mitreva --
Using WormBase: a genome biology resource for Caenorhabditis elegans and related nematodes / Christian Grove, Scott Cain, Wen J. Chen, Paul Davis, Todd Harris, Kevin L. Howe, Ranjana Kishore, Raymond Lee, Michael Paulini, Daniela Raciti, Mary Ann Tuli, Kimberly Van Auken, Gary Williams, and The WormBase Consortium --
Using WormBase ParaSite : an integrated platform for exploring helminth genomic data / Bruce J. Bolt, Faye H. Rodgers, Myriam Shafie, Paul J. Kersey, Matthew Berriman, and Kevin L. Howe --
Using FlyBase to find functionally related Drosophila genes / Alix J. Rey, Helen Attrill, Steven J. Marygold, and The FlyBase Consortium --
Hymenoptera genome database : using HymenopteraMine to enhance genomic studies of hymenopteran insects / Christine G. Elsik, Aditi Tayal, Deepak R. Unni, Gregory W. Burns, and Darren E. Hagen --
Navigating the i5k Workspace@NAL : a resource for Arthropod genomes / Monica F. Poelchau, Mei-Ju May Chen, Yu-Yu Lin, and Christopher P. Childers.
Series Title: Methods in molecular biology (Clifton, N.J.), v. 1757.
Responsibility: edited by Martin Kollmar.

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