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GENE PREDICTION : methods and protocols.

Publisher: [S.l.] : HUMANA, 2019.
Edition/Format:   eBook : Document : EnglishView all editions and formats
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Additional Physical Format: (OCoLC)1077935919
Material Type: Document, Internet resource
Document Type: Internet Resource, Computer File
ISBN: 9781493991730 1493991736
OCLC Number: 1101310432
Description: 1 online resource
Contents: Preface...Table of Contents...Contributing Authors...1. tRNAscan-SE: Searching for tRNA Genes in Genomic SequencesPatricia P. Chan and Todd M. Lowe2. Predicting RNA Families In Nucleotides Sequences Using StructRNAfinderVinicius Maracaja-Coutinho, Raul Arias-Carrasco, Helder I. Nakaya, and Victor Aliaga-Tobar3. Structural and Functional Annotation of Eukaryotic Genomes with GenSASJodi L. Humann, Taelin Lee, Stephen Ficklin, and Dorrie Main4. Practical Guide for Fungal Gene Prediction from Genome Assembly and RNA-seq Reads by FunGAPByoungnam Min and In-Geol Choi5. Whole-Genome Annotation with BRAKER Katharina Hoff, Alexandre Lomsadze, Mark Borodovsky, and Mario Stanke6. EuGene: An Automated Integrative Gene Finder for Eukaryotes and ProkaryotesErika Sallet, Jerome Gouzy, and Thomas Schiex7. ChemGenome2.1: An ab initio Gene Prediction SoftwareAkhilesh Mishra, Priyanka Siwach, Poonam Singhal, and B. Jayaram8. Multi-Genome Annotation with AUGUSTUSStefanie Nachtweide and Mario Stanke9. GeMoMa: Homology-Based Gene Prediction Utilizing Intron Position Conservation and RNA-seq DataJens Keilwagen, Frank Hartung, and Jan Grau10. Coding Exon-Structure Aware Realigner (CESAR): Utilizing Genome Alignments for Comparative Gene AnnotationVirag Sharma and Michael Hiller11. Predicting Genes in Closely Related Species with Scipio and WebScipioMartin Kollmar12. AnABlast, Re-Searching for Protein-Coding Sequences in Genomic RegionsAlejandro Rubio, Carlos S. Casimiro-Soriguer, Pablo Mier, Miguel A. Andrade-Navarro, Andres Garzon, Juan Jimenez, and Antonio J. Perez Pulido13. Generating Publication-Ready Prokaryotic Genome Annotations with DFASTYasuhiro Tanizawa, Takatomo Fujisawa, Masanori Arita, and Yasukazu Nakamura14. BUSCO: Assessing Genome Assembly and Annotation CompletenessMathieu Seppey, Mose Manni, and Evgeny M. Zbodnov15. Evaluating Genome Assemblies and Gene Models using gVolanteOsamu Nishimura, Yuichiro Hara, and Shigehiro Kuraku16. Choosing the Best Gene Predictions with GeneValidatorIsmail Moghul, Anurag Priyam, and Yannick Wurm17. COGNATE: Comparative Gene Annotation CharacterizerJeanne Wilbrandt

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