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Marine Metagenomics : Technological Aspects and Applications

Author: Takashi Gojōbori; Tokio Wada; Takanori Kobayashi; Katsuhiko Mineta
Publisher: Singapore : Springer Singapore, [2019]
Edition/Format:   eBook : Document : EnglishView all editions and formats
Summary:
This book presents the state-of-art marine metagenome research and explains the method of marine metagenomic analysis in an easy-to-understand manner. Changes in the marine environment due to global warming and pollution have become a major global problem. Maintaining a healthy marine ecosystem requires advanced environmental monitoring and assessment systems. As such, the book presents a novel metagenomic  Read more...
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Genre/Form: Electronic books
Additional Physical Format: Print version:
Marine Metagenomics.
Singapore : Springer Singapore, [2019]
(OCoLC)1091847476
Material Type: Document, Internet resource
Document Type: Internet Resource, Computer File
All Authors / Contributors: Takashi Gojōbori; Tokio Wada; Takanori Kobayashi; Katsuhiko Mineta
ISBN: 9789811381348 9811381348
OCLC Number: 1110246930
Description: 1 online resource (IX, 271 pages 104 illustrations, 83 illustrations in color.)
Contents: Part 1: Technological Aspects of Marine Metagenomics: Sample Collection and preparation methods --
Chapter 1: Metagenomic methods: from seawater to the database --
Chapter 2: Collection of microbial DNA from marine sediments --
Chapter 3: Primer design, evaluation of primer universality and estimation of identification power of amplicon sequences in silico --
Chapter 4: High coverage expression profiling (HiCEP) of microbial community genomes in the ocean --
Part 2: Technological Aspects of Marine Metagenomics: Metagenome Data Analysis --
Chapter 5: Introduction and application of Digital DNA Chip Analysis (DDCA) to metagenomic analysis --
Chapter 6: Horizontal gene transfer in marine environment: a technical perspective on metagenomics --
Chapter 7: MAPLE enables functional assessment of microbiota in various environments --
Part 3: Applications in Ocean and Fisheries Sciences: Diversity and Function of Microbial Community --
Chapter 8: Comparison of microscopic and PCR amplicon and shotgun metagenomic approaches applied to marine diatom communities --
Chapter 9: Seasonal dynamics of bacterial community composition in coastal seawater at Sendai Bay, Japan --
Chapter 10: Shotgun metagenome analyses: seasonality monitoring in Sendai Bay and search for red tide marker sequences --
Chapter 11: Distribution and community composition of ammonia-oxidizing archaea and bacteria in coastal sediments in response to sediment material gradients at Sendai Bay, Japan --
Chapter 12: Marine metagenomic sequence counts of reads assigned to taxa consistently proportionate to read counts obtained for per g of sea water sample --
Chapter 13: New aquaculture technology based on host-symbiotic co-metabolism --
Part 4: Applications in Ocean and Fisheries Sciences: Analysis of the Red Tide --
Chapter 14: Influences of diurnal sampling bias on fixed-point monitoring of plankton biodiversity determined using a massively parallel sequencing-based technique --
Chapter 15: Detection of microorg anisms which show positive or negative correlations with red tide causing alga using a new time-series network model.
Responsibility: Takashi Gojobori, Tokio Wada, Takanori Kobayashi, Katsuhiko Mineta, editors.

Abstract:

This book presents the state-of-art marine metagenome research and explains the method of marine metagenomic analysis in an easy-to-understand manner.Changes in the marine environment due to global  Read more...

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