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Microbial Systems Biology : Methods and Protocols

Author: Ali Navid
Publisher: Totowa, NJ : Humana Press, 2012.
Series: Methods in molecular biology, methods and protocols, 881
Edition/Format:   eBook : Document : EnglishView all editions and formats
Publication:Microbial systems biology.

This Methods in Molecular Biology (TM) volume describes experimental and computational tools used for studying microbial systems, and offers step-by-step, readily reproducible laboratory protocols,  Read more...


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Genre/Form: Online-Publikation
Additional Physical Format: Erscheint auch als:
Material Type: Document, Internet resource
Document Type: Internet Resource, Computer File
All Authors / Contributors: Ali Navid
ISBN: 9781617798276 1617798274 9781617798269 1617798266
OCLC Number: 798664567
Notes: Springer Protocols (Springer-12345).
Description: 1 Online-Ressource.
Contents: Part I: Sample Prepartion and Identification 1. Flow Cytometry in Environmental Microbiology: A RapidApproach for the Isolation of Single-Cells for Advanced Molecular Biology AnalysisFerrari BC., Winsley T., Bergquist PL. and van Dorst, J. 2. Pressure Cycling Technology in Systems BiologyBradford S. Powell, Alexander V. Lazarev, Greta Carlson, Alexander R. Ivanov, and David A. Rozak 3. Targeted Isolation of Proteins from Natural Microbial Communities Living in an Extreme EnvironmentSteven W. Singer 4. Bacterial Identification and Subtyping Using DNA Microarray and DNA Sequencing Sufian F. Al-Khaldi, Magdi M. Mossoba, Marc M. Allard, E. Kurt Lienau, and Eric D. Brown Part II: Experimental Genomic Analyses 5. Genetic Manipulation of the Obligate Chemolithoautotrophic Bacterium Thiobacillus denitrificansHarry R. Beller, Tina C. Legler, and Staci R. Kane 6. Genome-wide Mapping of the Binding Sites of Proteins that Interact with DNAStephen Spiro Part III: Protein and Lipid Analyses 7. MICROBIAL PROTEOMICS USING MASS SPECTROMETRYHarry B. Hines 8. Fourier Transform Infrared Spectroscopy for Molecular Analysis of Microbial CellsJesus J. Ojeda Part IV: Metabolomic Analyses 9. Mass Spectrometry-based Microbial MetabolomicsEdward E. K. Baidoo, Peter I. Benke and Jay D. Keasling 10. Fast Sampling of the Cellular MetabolomeWalter M. van Gulik, Andre B. Canelas, Hilal Taymaz-Nikerel, Rutger D. Douma, Lodewijk P. de Jonge and Joseph J. Heijnen Part V: Analyses of Cellular Metabolism 11. Metabolic Pathway Determination and Flux Analysis in Non-model Microorganisms through 13C-isotope LabelingXueyang Feng, Wei-Qin Zhuang, Peter Colletti, Yinjie J. Tang 12. Biolog Phenotype MicroarraysApril Shea, Mark Wolcott, Simon Daefler, and David Rozak 13. NanoSIP: NanoSIMS Applications for Microbial BiologyJennifer Pett-Ridge and Peter K. Weber Part VI: Kinetic Modeling of Cellular Processes 14. Electrophysiological-metabolic Modeling of Microbes: Applications in Fuel Cells and Environment AnalysisMax Fontus and Peter Ortoleva15. Simulating Microbial Systems: Addressing Model Uncertainty/Incompleteness via Multiscale and Entropy Methods A. Singharoy, H. Joshi, S. Cheluvaraja, Y. Miao, D. Brown and P. Ortoleva Part VII: Genome-Scale Computational Studies16. Bacterial Genome AnnotationNicholas Beckloff, Shawn Starkenburg, Tracey Freitas, and Patrick Chain 17. LeishCyc: a Guide to Building a Metabolic Pathway Database and the Visualization of Metabolic DataEleanor C. Saunders, James I. MacRae, Thomas Naderer, Milica Ng, Malcolm J. McConville and Vladimir A. Likic18. Development of Constraint-base System-level Models of Microbial Metabolism Ali Navid19. Complex Network Analysis in Microbial Systems: Theory and Examples Zahra Zavareh, Eivind Almaas 20. Modeling a Minimal Cell Michael L. Shuler, Patricia Foley, Jordan Atlas
Series Title: Methods in molecular biology, methods and protocols, 881
Responsibility: edited by Ali Navid.


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From the reviews:"This book ... deals with one of the most dynamic trends in Biology, namely Systems Biology of Microorganisms. ... Most of the chapters are of direct and immediate usefulness for Read more...

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